Software

Common Interval Rearrangement Explorer

Assigning rearrangements to the edges of a given phylogenetic tree

Software for reconstructing cophylogenies

A Particle Swarm Optimizer (PSO) for RNA secondary structure prediction

Draw publication ready pictures of mitochondrial genomes

Automatic Annotation of Metazoan Mitochondrial Genomes

Tool for reconstructing the coevolutionary history of host parasite systems

Tool for reconciling the phylogenetic trees of parasites with the trees of their respective hosts

Tool for reconstructing phylogenetic species trees based on information about paralogous genes

Tool for illustrating all equivalent parsimonious tandem duplication random loss (TDRL) rearrangement scenarios between two given mitochondrial gene orders

Dynamic programming algorithm that aims to compute a weight-minimum sequence of rearrangements for arbitrary mitochondrial gene orders

Calculate a shortest rearrangement scenario that transforms one given gene order into another given gene order

Compute a shortest rearrangement scenario that transforms one given gene order into another given gene order by using only rearrangements of type inversion, transposition, inverse transposition, and tandem duplication random loss