CREx: data input and options form
data and data options
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you can either input your data manually in the upper box, or select a file from your local harddisk with the form on the left. the data has to be in multi fasta format.
circular
linear
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select the type of genome which applies to your data
remove duplicates
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select this if CREx should remove equal gene orders from your data set
distance matrix
common intervals
breakpoints
reversal distance
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select the distance measure that should be used for the distance matrix
output
family diagram
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draw the family diagram in the comparison
interval tree
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draw the interval tree in the comparison
max. alternatives
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maximal number of possibly alternative scenarios for p-nodes to show
tree drawing
width
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width of the lines used to draw the boxes of the family diagrams or strong interval trees
margin
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the margin inside each box of the family diagrams of trees to separate it from its content
increasing
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line color used for linear increasing nodes
decreasing
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line color used for linear decreasing nodes
prime
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line color used for prime nodes
rearrangement drawing
inv & rt
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color that should be used to mark an inversion or the reversed part of a reverse transposition
tdrl & transp →
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color that should be used to mark the elements moved to the left by a transposition or a tdrl
tdrl & transp ←
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color that should be used to mark the elements moved to the right by a transposition or a tdrl
p-nodes
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color that should be used to mark affected pnodes
submit
reset