I am a member of the Bioinformatics Group of the Leipzig University now. My new webpage can be found here. Note that this page is no longer maintained.


Contact


E-Mail:

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Telefon:
+49 341 97 32279

Hausadresse:
Swarm Intelligence and Complex Systems Group
Faculty of Mathematics and Computer Science
Department of Computer Science
University of Leipzig
Augustusplatz 10
Paulinum
Room P 625
D-04109 Leipzig
Germany

Postadresse:
Tom Hartmann
Swarm Intelligence and Complex Systems Group
Faculty of Mathematics and Computer Science
Department of Computer Science
University of Leipzig
Postfach 10 09 20
D-04009 Leipzig
Germany

Dr. Tom Hartmann

Publications

2018


Tom Hartmann
Models and Algorithms for Sorting Permutations with Tandem Duplication and Random Loss
PhD Thesis
University Leipzig 2018 (under review)

Tom Hartmann, Max Bannach, Martin Middendorf
Sorting Signed Permutations by Inverse Tandem Duplication Random Losses
accepted for the 17th Asia Pacific Bioinformatics Conference (APBC'19)

Tom Hartmann, Martin Middendorf, Matthias Bernt
EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
BMC Bioinformatics (2018) 19:192
Link

Tom Hartmann, Matthias Bernt, Martin Middendorf
An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 16, Issue 1, pp. 52--62
Link

2017


Tom Hartmann, Martin Middendorf, Matthias Bernt
Genome Rearrangement Analysis: Cut and Join Genome Rearrangements and Gene Cluster Preserving Approaches
In Comparative Genomics (pp. 261-289). Humana Press, New York
Link

Tom Hartmann, Nicolas Wieseke, Roded Sharan, Martin Middendorf, and Matthias Bernt
Genome Rearrangement with ILP
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, Issue: 5, pp. 1585 - 1593
Link

2016


T. Hartmann, A. Chu, M. Middendorf, and M. Bernt
Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.15,Issue: 1
Link

Y.-C. Cheng, T. Hartmann, P.-Y. Tsai, M. Middendorf
Population Based Ant Colony Optimization for Reconstructing ECG Signals
Applications of Evolutionary Computation Vol. 9597, Lecture Notes in Computer Science, pp 770-785
Link

Y.-C. Cheng, T. Hartmann, P.-Y. Tsai, M. Middendorf
Population Based Ant Colony Optimization for Reconstructing ECG Signals
Evolutionary Intelligence (2016) 9: 55
Link

2015


N. Wieseke, T. Hartmann, M. Bernt, and M. Middendorf
Cophylogenetic Reconciliation with ILP
IEEE/ACM Transactions on Computational Biology and Bioinformatics,Vol.12,Issue: 6, pp 1227-1235
Link

Reviewing Activities


  • Algorithms for Molecular Biology
  • Bioinformatics
  • Evolutionary Bioinformatics
  • IEEE Transactions on Emerging Topics in Computational Intelligence (IEEE TETCI)
  • Journal of Bioinformatics and Computational Biology (JBCB)
  • Molecular Phylogenetics and Evolution
  • PLOS ONE

Supervised Thesis

Kai Hainke
Einsatz von PQ-Bäumen für populationsbasierte Ameisenalgorithmen
28.01.2019

Daniel Abitz
Entwicklung und Untersuchung eines populationbasierten Ameisenalgorithmus für ein Ein-Maschinen-Scheduling mit gewichteten Jobs
10.01.2019

Danilo Morgado Anglés
Ein Softwarewerkzeug zur Konstruktion und Ausführung von populationsbasierten Optimierungsalgorithmen
03.01.2019

Marlo Kriegs
Entwicklung eines Populationsbasierten Ameisenalgorithmus zum Sortieren von Permutationen durch Inversionen
16.01.2018

Karsten Schreiblehner
On Some Properties of the Condorcet Method and Its Use for Particle Swarm Optimization
22.08.2017

Philine Geser
Zur Komplexität des 2-Maschinen-Flow-Shop-Problems mit Zwischenspeicher
22.06.2017

Robert Terbach
A Population-Based Swarm Algorithm With Charged Particles for Dynamic Travelling Salesperson Problems
05.01.2017

Martin Winkel
Flowshop-Probleme mit Puffern: Analyse und Entwurf eines Ameisenalgorithmus
30.11.2015

Supplementary Materials

Tom Hartmann, Nicolas Wieseke, Roded Sharan, Martin Middendorf, and Matthias Bernt
Supplementary Material: Genome Rearrangement with ILP
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, Issue: 5, pp. 1585 - 1593
Paper